I just need to see what is stored, in realtime, in some particular variables and struct used by an application written in C.
I need something like the stack tracer that comes with the ADT plugins for Eclipse as part of the Android sdk.
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If I understand correctly you just need to use a debugger. If you compiled with gcc then you can use gdb. You will want to add the -g -O0 flags to include debugging symbols and turn off optimization. If you need to you can even attach gdb to a running process. I know microsoft has a similar debugger I'm just not familiar with it.