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I am curious how to deploy android native (that is, using android NDK or Qt C++) application to the end users. AFAIK, the apk files are much like jar files, so I assume native programs can't be deployed this way. Or can they?

Is there any difference between raw Android NDK application and Qt native application?

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They can and are - the native code libraries are packed into the apk and deployed with the 'wrapper' java app that is the entry point to running a NDK application.

Look at the Flow section of the concepts guide.

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